Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

IJMS, Free Full-Text

The Impact of Heterogeneous Computing on Workflows for Biomolecular Simulation and Analysis

Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

PDF) Maximizing accuracy of RNA structure in refinement against residual dipolar couplings

Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

a) Structural variations in tRNA Phe due to the effect of the presence

Computer-aided comprehensive explorations of RNA structural polymorphism through complementary simulation methods, QRB Discovery

Kenneth Lam, Ph.D. - Investigator, Applications - TandemAI

Calaméo - Nucleic Acids From A To Z A(1)

Origins of biological function in DNA and RNA hairpin loop motifs from replica exchange molecular dynamics simulation - Physical Chemistry Chemical Physics (RSC Publishing)

Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations. - Abstract - Europe PMC

Molecular dynamics simulations of cognate and non-cognate AspRS-tRNAAsp complexes: Journal of Biomolecular Structure and Dynamics: Vol 39, No 2

Full article: Adaptive steered molecular dynamics of biomolecules

Publications — Simmerling Lab

Base-specific RNA force field improving the dynamics conformation of nucleotide - ScienceDirect